NEWS

mFD 1.0.7.9000

Include new functions to deal with FEs:
from.spfe.to.feasb() which computes the assemblages × FEs dataframe with outputs of the mFD::sp.to.fe() function
fe.sp.df.computation() which creates a dataframe linking FEs names to species names with outputs of the mFD::sp.to.fe() function
search.sp.nm() which finds a species name given an FE name
from.fecoord.to.spcoord() function which converts the dataframe of FEs coordinates to one with species coordinates.
Update the website with a FAQ based on user's questions
Correct the dist.nearneighb() function in case of two species in the same FE so it looks for the closest species (dist = 0).
Change size argument of background.plot() function to linewidth (warning message showing up).
Add stop.if.NA argument in the call of check.sp.tr() in tr.cont.scales() and tr.cont.fspaces functions (otherwise when funct.dist() is called with numerical traits only and NAs, stop_if_NA argument doesn't work)

Traits names in the tr_cat dataframe must be the same that in the sp_tr dataframe: otherwise can lead to bugs if using weights: check.sp.tr()
Add a sentence explaining that in the General Workflow vignette

Fix bug:
- Correct the sp.plot() fct when plotting one asb (pb with vertices aes)
- Correct the sp.plot() fct when several sp same place but only one as vert

Fix bug:
- Correct funct.dist() function error when only quantitative traits (ISSUE 34)
Remove FSGE and FUGE from fuse() outputs

Add warning messages in funct.dist function: when using only continuous traits, no weighting is realised for now.
Add informations in the General Tutorial and in the Continuous Traits, no weighting is realised for now.
Fix bug:
- when computing FRic and FDiv but not enough species at different coordinates in the functional space to compute the convex-hull. Before it stopped with the error "Error in fdiv.computation(): Names of the vertices are not all present in species coordinates matrix. Please check." as FRic vert were NA. Now FRic vert are NULL and pas the check.
- when computing FEs with fuzzy traits, attribution of species to wrong FEs, so when computing FEs, creating as many FEs as species.

Fix bug:
- scale center traits (parenthesis missing) in tr.cont.scale function
- correct FDiv legend in plot
- correct typo in Functional entities vignette

New vignette: create customised plots
Review mFD general workflow: fixed typos and missing chunks
Fix minor bugs in some functions:
- correct beta functional axes names, beta.multidim.plot() function
- correct check fuzzy names, check.fuzzy() function
Review function documentation
Add paper citation to the READ.ME file