Package: mFD
Title: Compute and Illustrate the Multiple Facets of Functional
        Diversity
Version: 1.0.7.9000
Authors@R: c(
    person(given   = "Camille",
           family  = "Magneville",
           email   = "camille.magneville@gmail.com",
           role    = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0003-0489-3822")),
    person(given   = "Nicolas",
           family  = "Loiseau",
           email   = "nicolas.loiseau1@gmail.com",
           role    = "aut",
           comment = c(ORCID = "0000-0002-2469-1980")),
    person(given   = "Camille",
           family  = "Albouy",
           email   = "albouycamille@gmail.com",
           role    = "aut",
           comment = c(ORCID = "0000-0003-1629-2389")),
    person(given   = "Nicolas",
           family  = "Casajus",
           email   = "nicolas.casajus@fondationbiodiversite.fr",
           role    = "aut",
           comment = c(ORCID = "0000-0002-5537-5294")),
    person(given   = "Thomas",
           family  = "Claverie",
           email   = "tclaverie@gmail.com",
           role    = "aut",
           comment = c(ORCID = "0000-0002-6258-4991")),
    person(given   = "Arthur",
           family  = "Escalas",
           email   = "arthur.escalas@gmail.com",
           role    = "aut",
           comment = c(ORCID = "0000-0002-6450-5716")),
    person(given   = "Fabien",
           family  = "Leprieur",
           email   = "fabien.leprieur@umontpellier.fr",
           role    = "aut",
           comment = c(ORCID = "0000-0001-6869-342X")),
    person(given   = "Eva",
           family  = "Maire",
           email   = "emg.maire@gmail.com",
           role    = "aut",
           comment = c(ORCID = "0000-0002-1032-3394")),
    person(given   = "David",
           family  = "Mouillot",
           email   = "david.mouillot@umontpellier.fr",
           role    = "aut",
           comment = c(ORCID = "0000-0003-0402-2605")),
    person(given   = "Sebastien",
           family  = "Villeger",
           email   = "sebastien.villeger@cnrs.fr",
           role    = "aut",
           comment = c(ORCID = "0000-0002-2362-7178")))
Description: Computing functional traits-based distances between pairs
        of species for species gathered in assemblages allowing to
        build several functional spaces. The package allows to compute
        functional diversity indices assessing the distribution of
        species (and of their dominance) in a given functional space
        for each assemblage and the overlap between assemblages in a
        given functional space, see: Chao et al. (2018)
        <doi:10.1002/ecm.1343>, Maire et al. (2015)
        <doi:10.1111/geb.12299>, Mouillot et al. (2013)
        <doi:10.1016/j.tree.2012.10.004>, Mouillot et al. (2014)
        <doi:10.1073/pnas.1317625111>, Ricotta and Szeidl (2009)
        <doi:10.1016/j.tpb.2009.10.001>. Graphical outputs are
        included. Visit the 'mFD' website for more information,
        documentation and examples.
URL: https://cmlmagneville.github.io/mFD/,
        https://github.com/CmlMagneville/mFD
BugReports: https://github.com/CmlMagneville/mFD/issues
License: GPL-2
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5)
Imports: ade4, ape, betapart (>= 1.5.4), cluster, dendextend,
        FactoMineR, gawdis, geometry, ggplot2, ggrepel, grid, Hmisc,
        patchwork (>= 1.2.0), reshape2, rstatix, stats, utils, vegan
Suggests: dplyr (>= 1.0.6), knitr, magrittr, rmarkdown (>= 2.6),
        stringr, tibble, tidyr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libgmp3-dev make libicu-dev libuv1-dev
Repository: https://frbcesab.r-universe.dev
Date/Publication: 2026-06-12 13:04:49 UTC
RemoteUrl: https://github.com/CmlMagneville/mFD
RemoteRef: HEAD
RemoteSha: 419cf59c59dce9cd35e9ac8eab2051bf4bce2719
NeedsCompilation: no
Packaged: 2026-06-12 14:49:44 UTC; root
Author: Camille Magneville [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-0489-3822>),
  Nicolas Loiseau [aut] (ORCID: <https://orcid.org/0000-0002-2469-1980>),
  Camille Albouy [aut] (ORCID: <https://orcid.org/0000-0003-1629-2389>),
  Nicolas Casajus [aut] (ORCID: <https://orcid.org/0000-0002-5537-5294>),
  Thomas Claverie [aut] (ORCID: <https://orcid.org/0000-0002-6258-4991>),
  Arthur Escalas [aut] (ORCID: <https://orcid.org/0000-0002-6450-5716>),
  Fabien Leprieur [aut] (ORCID: <https://orcid.org/0000-0001-6869-342X>),
  Eva Maire [aut] (ORCID: <https://orcid.org/0000-0002-1032-3394>),
  David Mouillot [aut] (ORCID: <https://orcid.org/0000-0003-0402-2605>),
  Sebastien Villeger [aut] (ORCID:
    <https://orcid.org/0000-0002-2362-7178>)
Maintainer: Camille Magneville <camille.magneville@gmail.com>