Package: forcis 0.1.0.9000

Nicolas Casajus

forcis: An R Client to Access the FORCIS Database

Provides an interface to the FORCIS database (<https://zenodo.org/doi/10.5281/zenodo.7390791>) on global foraminifera distribution. This package allows to download and to handle FORCIS data. It is part of the FRB-CESAB working group FORCIS. <https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/forcis/>.

Authors:Nicolas Casajus [aut, cre, cph], Mattia Greco [aut], Sonia Chaabane [aut], Xavier Giraud [aut], Thibault de Garidel-Thoron [aut], Khalil Hammami [ctb], FRB-CESAB [fnd]

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forcis.pdf |forcis.html✨
forcis/json (API)

# Install 'forcis' in R:
install.packages('forcis', repos = c('https://frbcesab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/frbcesab/forcis/issues

On CRAN:

5.84 score 3 stars 5 scripts 31 exports 56 dependencies

Last updated 1 months agofrom:eeda0f9667. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-winOKNov 19 2024
R-4.5-linuxOKNov 19 2024
R-4.4-winOKNov 19 2024
R-4.4-macOKNov 19 2024
R-4.3-winOKNov 19 2024
R-4.3-macOKNov 19 2024

Exports:compute_abundancescompute_concentrationscompute_frequenciesconvert_to_long_formatdata_to_sfdownload_forcis_dbfilter_by_bboxfilter_by_monthfilter_by_oceanfilter_by_polygonfilter_by_speciesfilter_by_yeargeom_basemapget_available_versionsget_current_versionget_ocean_namesget_required_columnsget_species_namesget_version_metadataggmap_dataplot_record_by_depthplot_record_by_monthplot_record_by_seasonplot_record_by_yearread_cpr_north_dataread_cpr_south_dataread_plankton_nets_dataread_pump_dataread_sediment_trap_dataselect_forcis_columnsselect_taxonomy

Dependencies:bitbit64classclassIntclicolorspacecpp11crayonDBIdplyre1071fansifarvergenericsggplot2gluegtablehmsisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogressproxypurrrR6RColorBrewerRcpprlangs2scalessfstringistringrtibbletidyrtidyselecttzdbunitsutf8vctrsviridisLitevroomwithrwk

Data conversion

Rendered fromdata-conversion.Rmdusingknitr::rmarkdownon Nov 19 2024.

Last update: 2024-09-28
Started: 2024-02-12

Data visualization

Rendered fromdata-visualization.Rmdusingknitr::rmarkdownon Nov 19 2024.

Last update: 2024-10-14
Started: 2024-02-12

Database versions

Rendered fromdatabase-versions.Rmdusingknitr::rmarkdownon Nov 19 2024.

Last update: 2024-10-14
Started: 2024-02-12

Get started

Rendered fromforcis.Rmdusingknitr::rmarkdownon Nov 19 2024.

Last update: 2024-09-28
Started: 2021-11-16

Sampling devices

Rendered fromsampling-devices.Rmdusingknitr::rmarkdownon Nov 19 2024.

Last update: 2024-07-15
Started: 2024-04-23

Select, reshape, and filter data

Rendered fromselect-and-filter-data.Rmdusingknitr::rmarkdownon Nov 19 2024.

Last update: 2024-10-14
Started: 2024-02-23