{ "_id": "6a1fca5fb401979e734323e8", "Package": "mFD", "Title": "Compute and Illustrate the Multiple Facets of Functional\nDiversity", "Version": "1.0.7.9000", "Authors@R": "c(\nperson(given = \"Camille\",\nfamily = \"Magneville\",\nemail = \"camille.magneville@gmail.com\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-0489-3822\")),\nperson(given = \"Nicolas\",\nfamily = \"Loiseau\",\nemail = \"nicolas.loiseau1@gmail.com\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-2469-1980\")),\nperson(given = \"Camille\",\nfamily = \"Albouy\",\nemail = \"albouycamille@gmail.com\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-1629-2389\")),\nperson(given = \"Nicolas\",\nfamily = \"Casajus\",\nemail = \"nicolas.casajus@fondationbiodiversite.fr\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-5537-5294\")),\nperson(given = \"Thomas\",\nfamily = \"Claverie\",\nemail = \"tclaverie@gmail.com\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-6258-4991\")),\nperson(given = \"Arthur\",\nfamily = \"Escalas\",\nemail = \"arthur.escalas@gmail.com\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-6450-5716\")),\nperson(given = \"Fabien\",\nfamily = \"Leprieur\",\nemail = \"fabien.leprieur@umontpellier.fr\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-6869-342X\")),\nperson(given = \"Eva\",\nfamily = \"Maire\",\nemail = \"emg.maire@gmail.com\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-1032-3394\")),\nperson(given = \"David\",\nfamily = \"Mouillot\",\nemail = \"david.mouillot@umontpellier.fr\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-0402-2605\")),\nperson(given = \"Sebastien\",\nfamily = \"Villeger\",\nemail = \"sebastien.villeger@cnrs.fr\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-2362-7178\")))", "Description": "Computing functional traits-based distances between pairs\nof species for species gathered in assemblages allowing to\nbuild several functional spaces. The package allows to compute\nfunctional diversity indices assessing the distribution of\nspecies (and of their dominance) in a given functional space\nfor each assemblage and the overlap between assemblages in a\ngiven functional space, see: Chao et al. (2018)\n, Maire et al. (2015)\n, Mouillot et al. (2013)\n, Mouillot et al. (2014)\n, Ricotta and Szeidl (2009)\n. Graphical outputs are\nincluded. Visit the 'mFD' website for more information,\ndocumentation and examples.", "URL": "https://cmlmagneville.github.io/mFD/,\nhttps://github.com/CmlMagneville/mFD", "BugReports": "https://github.com/CmlMagneville/mFD/issues", "License": "GPL-2", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake libgmp3-dev make libicu-dev libuv1-dev", "Repository": "https://frbcesab.r-universe.dev", "Date/Publication": "2026-04-24 13:46:25 UTC", "RemoteUrl": "https://github.com/CmlMagneville/mFD", "RemoteRef": "HEAD", "RemoteSha": "b587bcaddcc20ee79e359664a4f847caf0867518", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 08:13:00 UTC", "User": "root" }, "Author": "Camille Magneville [aut, cre, cph] (ORCID:\n),\nNicolas Loiseau [aut] (ORCID: ),\nCamille Albouy [aut] (ORCID: ),\nNicolas Casajus [aut] (ORCID: ),\nThomas Claverie [aut] (ORCID: ),\nArthur Escalas [aut] (ORCID: ),\nFabien Leprieur [aut] (ORCID: ),\nEva Maire [aut] (ORCID: ),\nDavid Mouillot [aut] (ORCID: ),\nSebastien Villeger [aut] (ORCID:\n)", "Maintainer": "Camille Magneville ", "MD5sum": "3632ab385020199eacd4a5ecfd48331f", "_user": "frbcesab", "_type": "src", "_file": "mFD_1.0.7.9000.tar.gz", "_fileid": "8be730b6e56b1c27fc5e4a0e39a87a2d022d79b70c4e8938a7df87865f3483e9", "_filesize": 5764804, "_sha256": "8be730b6e56b1c27fc5e4a0e39a87a2d022d79b70c4e8938a7df87865f3483e9", "_created": "2026-06-02T08:13:00.000Z", "_published": "2026-06-03T06:31:59.257Z", "_distro": "noble", "_jobs": [ { "job": 79235309615, "time": 192, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7352459438" }, { "job": 79235309683, "time": 195, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7352460645" }, { "job": 79235309522, "time": 131, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7352439211" }, { "job": 79235309744, "time": 126, "config": 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Why Functional Entities (FEs)?", "2. Tutorial's data", "3. Gather species into FEs", "4. Compute alpha and beta functional indices", "5. Plot functional indices based on FEs", "References" ], "created": "2021-01-20 08:33:05", "modified": "2022-11-28 09:05:03", "commits": 19 }, { "source": "mFD_general_workflow.Rmd", "filename": "mFD_general_workflow.html", "title": "mFD: General Workflow", "author": "Camille Magneville", "engine": "knitr::rmarkdown", "headings": [ "About this tutorial", "Overview of the functional framework", "1. Know your data", "1.1. What types of traits am I using?", "1.2. Summarize my traits", "1.3. Summarize my assemblages", "2. Gathering species into functional entities", "3. Computing distances between species based on functional traits", "4. Computing functional spaces & their quality", "4.1. Compute multimensional functional spaces and assess their quality", "4.2. Illustrating the quality of the selected functional spaces", "5. Test correlation between functional axes and traits", "6. Plot functional space", "7. Compute functional diversity indices & plot them", "7.1. Functional alpha diversity indices in a multidimensional space", "7.2. Functional beta diversity indices based on multidimensional space", "References" ], "created": "2021-01-19 10:23:52", "modified": "2026-04-24 13:21:54", "commits": 66 } ], "_score": 7.5423273827739745, "_indexed": false, "_nocasepkg": "mfd", "_universes": [ "frbcesab" ], "_indexurl": "https://cmlmagneville.r-universe.dev/mFD", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.7.9000", "date": "2026-06-02T08:15:54.000Z", "distro": "noble", "commit": "b587bcaddcc20ee79e359664a4f847caf0867518", "fileid": "b120cc935fce66bb91a4c0c628da789903da9b6cd5a619196df74c2602ee2ff1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/frbcesab/actions/runs/26806993141" }, { "r": "4.6.0", "os": "linux", "version": "1.0.7.9000", "date": "2026-06-02T08:15:58.000Z", "distro": "noble", "commit": "b587bcaddcc20ee79e359664a4f847caf0867518", "fileid": "bec58c9006fee806e4e4732e6b8d420ce55f4853d9d44947bb4fe377b14d5f9b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/frbcesab/actions/runs/26806993141" }, { "r": "4.5.3", "os": "mac", "version": "1.0.7.9000", "date": "2026-06-02T08:15:03.000Z", "commit": "b587bcaddcc20ee79e359664a4f847caf0867518", "fileid": "4440e9440e5cd2e69ad8430e908f47cc9c0fb8cf5d7bb9ad0a4fb33498ad94bf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/frbcesab/actions/runs/26806993141" }, { "r": "4.6.0", "os": "mac", "version": "1.0.7.9000", "date": "2026-06-02T08:14:53.000Z", "commit": "b587bcaddcc20ee79e359664a4f847caf0867518", "fileid": "6bbf4a9ad12c7a5c6a628c45b9ba96e0d99d3d2fe07e057d87581f0aca7a3c32", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/frbcesab/actions/runs/26806993141" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.7.9000", "date": "2026-06-02T08:15:45.000Z", "commit": "b587bcaddcc20ee79e359664a4f847caf0867518", "fileid": "ce9a2517433063a070ad0309a4cba3c872b03f0c68089178eba5484f5d0d654e", "status": "success", "buildurl": "https://github.com/r-universe/frbcesab/actions/runs/26806993141" }, { "r": "4.7.0", "os": "win", "version": "1.0.7.9000", "date": "2026-06-02T08:14:51.000Z", "commit": "b587bcaddcc20ee79e359664a4f847caf0867518", "fileid": "638b78c44b0b23fb2a27465f801a1b58a266f08fb6eea63a821da201d48d5aa8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/frbcesab/actions/runs/26806993141" }, { "r": "4.5.3", "os": "win", "version": "1.0.7.9000", "date": "2026-06-02T08:14:43.000Z", "commit": "b587bcaddcc20ee79e359664a4f847caf0867518", "fileid": "b0f21792c8be234805ade448d2bbda39da9d506ab3527bb9a37c6b0c7d5c4dc7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/frbcesab/actions/runs/26806993141" }, { "r": "4.6.0", "os": "win", "version": "1.0.7.9000", "date": "2026-06-03T06:30:48.000Z", "commit": "b587bcaddcc20ee79e359664a4f847caf0867518", "fileid": "ee666aa4fdb68b0f1a727fb48e8409c5af77d21ce6e914bf192f430ac4b341f3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/frbcesab/actions/runs/26806993141" } ] }